Commit 552f7b5a authored by Youngseob KIM's avatar Youngseob KIM

Modif

parent c928c251
......@@ -111,15 +111,20 @@
\begin{itemize}
\item 3 simulation domains from the continental scale to the regional scale
\begin{itemize}
\item Domain 1 (Europe): 0.5$^\circ$ X 0.5$^\circ$
\item Domain 2 (France): 0.1$^\circ$ X 0.1$^\circ$
\item Domain 3 (Île-de-France): 0.02$^\circ$X 0.02$^\circ$
\item \small Domain 1 (Europe): 0.5$^\circ$ X 0.5$^\circ$
\item \small Domain 2 (France): 0.1$^\circ$ X 0.1$^\circ$
\item \small Domain 3 (Île-de-France): 0.02$^\circ$X 0.02$^\circ$
\end{itemize}
\end{itemize}
\end{block}
\centering
\includegraphics[width=0.5\textwidth]{domains_map.png}
\includegraphics[width=0.5\textwidth]{PM10_speciation.png}\\
\includegraphics[width=0.4\textwidth]{domains_map.png}
\includegraphics[width=0.4\textwidth]{PM10_speciation.png}\\
\begin{block}{}
\small Polair3d model: Eulerian 3D chemistry-transport model (transport, gas-phase chemistry and aerosol chemistry)
\end{block}
\end{frame}
......@@ -139,8 +144,8 @@
If your login is successful, please follow the next step
\begin{Verbatim}[fontsize=\small]
> ssh YourMachine
> mkdir /net/libre/jomungand/YourID
> cd /net/libre/jomungand/YourID
> mkdir /net/libre/<YourMachine>/YourID
> cd /net/libre/<YourMachine>/YourID
\end{Verbatim}
......@@ -148,7 +153,7 @@
%%%%
\begin{frame}[fragile]{Download the configuration files and input data}
\begin{frame}[fragile]{Download source files and configuration files}
\begin{block}{}
You need to download and extract the archive
......@@ -186,16 +191,24 @@ Please check if you have the following sub-folders in \code{tp\_polu1}:
%%%
\begin{frame}[fragile]{Additional files}
\begin{block}{Link to input data and a folder for results data}
\begin{frame}[fragile]{Input and output files}
\begin{block}{Link to input data}
\begin{Verbatim}[fontsize=\small]
> ln -s /net/libre/trami/kimy/tp_polu1/simulation_2016/data .
> mkdir results
> cd simulation_2016
> rsync -av
/net/libre/izapa/tp_test/tp_polu1/simulation_2016/data .
\end{Verbatim}
\end{block}
\begin{block}{Make a folder to save results data}
\begin{Verbatim}[fontsize=\small]
> mkdir results
\end{Verbatim}
\end{block}
\end{frame}
......@@ -213,28 +226,23 @@ It is compiled by typing \code{scons}.
> scons -j4 mpi=yes
\end{Verbatim}
Check if the executable \code{polair3d-scram-soap-cb05} has been generated
\begin{Verbatim}[fontsize=\small]
> ls polair3d-scram-soap-cb05
\end{Verbatim}
Configuration files are in :
\begin{verbatim}
<working_directory>/simulation_2016/config
> cd ../../../simulation_2016/config
\end{verbatim}
They are set to be applied, however check their contents.
Input data files are in :
\begin{verbatim}
<working_directory>/simulation_2016/data
\end{verbatim}
Simulation results will be written in :
\begin{verbatim}
<working_directory>/simulation_2016/results
\end{verbatim}
\end{frame}
%%%%
\begin{frame}[fragile]{Configuration files}
\begin{block}{Prepare the configuration files}
Three configuration files
\begin{itemize}
......@@ -274,8 +282,10 @@ Bin_bounds:
\end{block}
\code{Bin\_bounds}: particle size distribution\\
- Size bin 0: particle with a diameter between 0.01 $\micro$m and 0.0398 $\micro$m
\begin{block}{\code{Bin\_bounds}: particle size distribution}
In this simulation, there are 5 aerosol size bins (0 to 4). \\
Size bin 0: particle with a diameter between 0.01 $\micro$m and 0.0398 $\micro$m
\end{block}
\end{frame}
......@@ -314,10 +324,15 @@ Result_dir: ../results/
\begin{block}{}
Check your current directory is \code{~/tp_polu1/simulation_2016/config/}
\begin{Verbatim}[fontsize=\scriptsize]
> pwd
\end{Verbatim}
\begin{Verbatim}[fontsize=\scriptsize]
> cd <working_directory>/simulation_2016/config
> ln -s ../../Polyphemus-1.11.1/processing/scram-soap/polair3d-scram-soap-cb05 .
> polair3d-scram-soap-cb05 polair3d.cfg
> mpirun -n 4 polair3d-scram-soap-cb05 polair3d.cfg
\end{Verbatim}
\end{block}
......@@ -329,17 +344,17 @@ Result_dir: ../results/
Module: SOA computation approach:equilibrium
Module: without sea salt in isorropia
Performing iteration #0
Current date: 2016-11-30 00:00
Current date: 2016-11-30 12:00
Performing iteration #1
Current date: 2016-11-30 00:10
Current date: 2016-11-30 12:10
Performing iteration #2
Current date: 2016-11-30 00:20
Current date: 2016-11-30 12:20
Performing iteration #3
Current date: 2016-11-30 00:30
Current date: 2016-11-30 12:30
Performing iteration #4
Current date: 2016-11-30 00:40
Current date: 2016-11-30 12:40
Performing iteration #5
Current date: 2016-11-30 00:50
Current date: 2016-11-30 12:50
\end{Verbatim}
......
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