Modif.

tp_polu1-doc.tex

@@ -139,8 +139,8 @@
     If your login is successful, please follow the next step
     \begin{Verbatim}[fontsize=\small]
       > ssh YourMachine
-      > mkdir /net/libre/trami/YourID
-      > cd /net/libre/trami/YourID
+      > mkdir /net/libre/jomungand/YourID
+      > cd /net/libre/jomungand/YourID
     \end{Verbatim}
     
 
@@ -151,23 +151,17 @@
 \begin{frame}[fragile]{Download the configuration files and input data}
   \begin{block}{}
 
-\begin{Verbatim}[fontsize=\small]
-> cd <working_directory>/Polyphemus-1.11.1/processing/scram-soap
-> scons 
-\end{Verbatim}
-
-
-\begin{verbatim}
-> tar -xjvf tp_polu1.tar.bz2
-\end{verbatim}
-
     You need to download and extract the archive
     \code{tp\_polu1.tar.bz2} in your working directory.
+
+    \begin{Verbatim}[fontsize=\small]
+      > cp /net/libre/trami/kimy/tp_polu1.tar.bz2 .
+      > tar -xjvf tp_polu1.tar.bz2
+      > cd tp_polu1
+    \end{Verbatim}
+
   \end{block}
 
-\begin{verbatim}
-> tar -xjvf tp_polu1.tar.bz2
-\end{verbatim}
 
   \begin{block}{}
 Please check if you have the following sub-folders in \code{tp\_polu1}:
@@ -179,46 +173,30 @@ Please check if you have the following sub-folders in \code{tp\_polu1}:
   grow via three points={one child at (0.5,-0.7) and
   two children at (0.5,-0.7) and (0.5,-1.4)},
   edge from parent path={(\tikzparentnode.south) |- (\tikzchildnode.west)}]
-  \node {sing-training}
-    child { node {\code{Polyphemus-XXX}: }}		
-    child { node {\code{rawdata}:}}
-    child { node [selected] {\code{polair3d}: }
-      child { node {europe}
-      }
-      child { node {france}}
-    };
-
-    % child { node [selected] {tex}
-    %   child { node {generic}}
-    %   child { node [optional] {latex}}
-    %   child { node {plain}}
-    % }
-    % child [missing] {}				
-    % child [missing] {}				
-    % child [missing] {}				
-    % child { node {texdoc}};
+  \node {tp\_polu1}
+     child { node {\code{Polyphemus-1.11.1}: Polyphemus source files}}		
+     child { node {\code{simulation\_2016}}
+       child { node {\code{config}: configurations files}}
+     };
 \end{tikzpicture}
 \end{block}
 
+
 \end{frame}
 
 
 %%%
-\begin{frame}[fragile]{Sub-folders}
+\begin{frame}[fragile]{Additional files}
+\begin{block}{Link to input data and a folder for results data}
+
+    \begin{Verbatim}[fontsize=\small]
+      > ln -s /net/libre/trami/kimy/tp_polu1/simulation_2016/data .
+      > mkdir results
+    \end{Verbatim}
 
-\begin{block}{}
-\begin{itemize}
-\item \code{europe}: 
-  \begin{itemize}
-  \item \code{preprocessing}: python scripts to convert raw data for SinG simulation.
-  \item \code{processing}: configuration files for SinG simulation.
-  \item \code{data}
-  \item \code{results}
-  \end{itemize}
-\item \code{france}
-\end{itemize}
 \end{block}
 
+
 \end{frame}
 
 
@@ -231,8 +209,8 @@ Please check if you have the following sub-folders in \code{tp\_polu1}:
 It is compiled by typing \code{scons}. 
 
 \begin{Verbatim}[fontsize=\small]
-> cd <working_directory>/Polyphemus-1.11.1/processing/scram-soap
-> scons 
+> cd ../Polyphemus-1.11.1/processing/scram-soap
+> scons -j4 mpi=yes 
 \end{Verbatim}
 
 
@@ -438,9 +416,9 @@ For dust, the total mass of \code{PMD} is \code{PMD\_0 + PMD\_1 + PMD\_2 + PMD\_
   \end{block}
 
 
-  \begin{block}{Particulate Matter: by size}
+  \begin{block}{Regulated Particulate Matter: by size}
     \begin{itemize}
-      \item \small Coarse particles: PM$_{10}$ (diameter less than 10 $\micro$m)
+      \item \small PM$_{10}$ (diameter less than 10 $\micro$m)
       \item \small Fine particles: PM$_{2.5}$ (diameter less than 2.5 $\micro$m)
     \end{itemize}
   \end{block}
@@ -450,8 +428,6 @@ For dust, the total mass of \code{PMD} is \code{PMD\_0 + PMD\_1 + PMD\_2 + PMD\_
 %%%%%
 \begin{frame}[fragile]{Pollutant concentrations}
 
-\centering
-
   \begin{block}{Concentrations of pollutants (in $\micro$g m$^{-3}$)}
     \begin{itemize}
       \item \small Ozone: 
@@ -461,7 +437,7 @@ For dust, the total mass of \code{PMD} is \code{PMD\_0 + PMD\_1 + PMD\_2 + PMD\_
     \end{itemize}
   \end{block}
 
-  \begin{block}{Chemical composition of PM (in $\micro$g m$^{-3}$)}
+  \begin{block}{Chemical composition of PM$_{10}$ (in $\micro$g m$^{-3}$)}
     \begin{itemize}
       \item \small Dust: 
       \item \small Black carbon: 
@@ -489,11 +465,12 @@ European emission standards for exhaust emissions of new vehicles changed from E
 \begin{Verbatim}[fontsize=\scriptsize]
 > cd <working_directory>/Polyphemus-1.11.1/utils
 > scons mult_nb_float
-> cd ../../simulation_2016/data/emissions/surface-emissions
+> cd ../../
+> mdkir data_modif
+> cd data_modif
 > ln -s ../../Polyphemus-1.11.1/utils/mult_nb_float .
-
-> mult_nb_float NO.bin 0.45 NO_modif.bin
-> mult_nb_float NO2.bin 0.45 NO2_modif.bin
+> mult_nb_float ../data/emissions/surface-emissions/NO.bin 0.45 NO_modif.bin
+> mult_nb_float ../data/emissions/surface-emissions/NO2.bin 0.45 NO2_modif.bin
 \end{Verbatim}
   \end{block}
 
@@ -513,8 +490,8 @@ Fields: ALD2 CH4 ETHA IOLE MEOH SO2 XYL ALDX CO ETOH HC8 ISOP NH3 OLE TERP ETH
 FORM HONO PAR TOL API LIM SULF POAhP POAlP POAmP
 Filename: <Directory_data>/emissions/surface-emissions/&f.bin
 
-NO: <Directory_data>/emissions/surface-emissions/NO_modif.bin
-NO2: <Directory_data>/emissions/surface-emissions/NO2_modif.bin
+NO: ../data_modif/NO_modif.bin
+NO2: ../data_modif/NO2_modif.bin
 
 \end{Verbatim}
 \end{block}